Entering edit mode
7.7 years ago
mehtaaditya99
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0
Hi currently i m working on Plant genome assembly. My target genome size is approx ~ 600 to 800 Mb. Currently i m using Velvet , SOAP and ABYSS for assembly of Illumina paired end reads. Currently above all the three assembler gave me comparable results at kmer 77 to 89. Can anybody will give me the reference who assembled plant genome using ABYSS. In my assembly ABYSS gave me good result at Kmer89 so. I want to considere my final assembly with ABYSS.
Might be of interest, fairly recently published is ABySS 2.0: http://biorxiv.org/content/early/2016/08/07/068338
I'm using ABySS for all my large (plant) genome assemblies, very pleased with it both in result and resource wise