I got problem when I was trying to git clone some submodules, even though I used --recursive. The thing is I can git clone the repository successfully. The command I used was:
git clone --recursive git://github.com/BioInf-Wuerzburg/proovread
I got log like this:
Cloning into 'proovread'...
remote: Counting objects: 2034, done.
remote: Total 2034 (delta 0), reused 0 (delta 0), pack-reused 2034
Receiving objects: 100% (2034/2034), 9.20 MiB | 4.58 MiB/s, done.
Resolving deltas: 100% (1276/1276), done.
Checking connectivity... done.
Checking out files: 100% (57/57), done.
Submodule 'util/SeqChunker' (https://github.com/BioInf-Wuerzburg/SeqChunker.git) registered for path 'util/SeqChunker'
Submodule 'util/SeqFilter' (https://github.com/BioInf-Wuerzburg/SeqFilter.git) registered for path 'util/SeqFilter'
Submodule 'util/bwa' (https://github.com/BioInf-Wuerzburg/bwa.git) registered for path 'util/bwa'
Cloning into 'util/SeqChunker'...
fatal: unable to access 'https://github.com/BioInf-Wuerzburg/SeqChunker.git/': SSL connection timeout
Clone of 'https://github.com/BioInf-Wuerzburg/SeqChunker.git' into submodule path 'util/SeqChunker' failed
However, it'll work if I clone each submodules seperately, e.g.: git clone git://github.com/BioInf-Wuerzburg/SeqChunker.git .(it won't if I use git clone https://github.com/BioInf-Wuerzburg/SeqChunker.git)
Any help is highly appreciated. Thanks.