Anyone familiar with software Proovread? I got some problem.
After I got ~100 .fq long reads files from SeqChunker step (as suggested by the program mannual), I wonder how to add this list of files into the program? for example, we can use <-s 1.fq -s 2.fq -s 3.fq> for many high quality short reads, how to deal with ~100 long reads .fq files.
In the proovread.cfg file, it says (line37-38):
LIST of Pacbio read files to correct. FASTA or FASTQ format.
'long-reads' => ,
However, I cannot figure out how to use this option.
'long-reads' => [pb-001.fq],[pb-002.fq]
'long-reads' => [pb-001.fq], 'long-reads' => [pb-002.fq],
'long-reads' => [*.fq],
ALL of them are FAILED. Any suggestions? Thanks