Hi, I have only Illuming paired-end reads form 2.5 Gbp plant genome.
#this parameter is useful if you have too many jumping library mates. Typically set it to 60 for bacteria and 300 for the other organisms LIMIT_JUMP_COVERAGE = 300
#set cgwErrorRate=0.25 for bacteria and ANY assembly containign PACBIO data and 0.1<=cgwErrorRate<=0.15 for other organisms. CA_PARAMETERS = cgwErrorRate=0.25
What would be the best way to set
Thank you in advance.