Question: How to use SNPEff software for comparison of a set of 100 VCF files?
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gravatar for valentina_stepanenko
4.3 years ago by
valentina_stepanenko0 wrote:

How to use SNPEff software for comparison of a set of 100 VCF files? Is there any example or a recipe?

snp vcf • 1.4k views
ADD COMMENTlink written 4.3 years ago by valentina_stepanenko0

Have you considered the manual? http://snpeff.sourceforge.net/SnpEff_manual.html

ADD REPLYlink written 4.3 years ago by WouterDeCoster44k

I think you should have a look on SnpSift not SNPEff also away from Snp...
have a look at http://varianttools.sourceforge.net/ specially http://varianttools.sourceforge.net/Vtools/Compare

ADD REPLYlink modified 4.3 years ago • written 4.3 years ago by Medhat8.8k

thank you................................................

ADD REPLYlink written 4.3 years ago by valentina_stepanenko0
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