I have a task that is to generate .bed files from the files I have, but I am not sure how PLINK can do it.
What I have are two files, the SNP file is as following:
*id: 1, 2, 3, 4, 5* *1: A/A G/G A/A A/A A/A* *2: G/G A/A A/A NA A/A* *3: G/G G/G A/A A/A A/A* *4: T/T C/C C/C C/C C/C*
and I also have marker description file:
*marker_rid marker_name marker_alleles chrom base_pair* *1 MitoA10551G A/G M 10551* *2 MitoA11252G A/G M 11252* *3 MitoA11468G A/G M 11468* *4 MitoA11813G C/T M 11813*
Which means that I have 5 samples, each with a sequence length of 4.
Is there a command from PLINK that can allow me to do that?