SNPEFF Sequence Ontology Terms that are equivalent to a Loss of Function
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6.0 years ago

I'm writing a script that will identify loss of function mutations in a SNPEFF-annotated MAF file containing point mutations, indels or, in some cases, both.

So far, I've been doing this is by typing up a list of every Sequence Ontology value that indicates a loss of function:

stop_gained start_lost etc

But I suspect this has already been done and wonder if someone can point me if the right direction of finding such a list.

snp sequencing • 1.4k views
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