Question: How to find all chloroplast genes from SNP data of whole genome of 200 rice accession??
gravatar for naveedkhanchemist
3.5 years ago by
naveedkhanchemist0 wrote:

Hello Buddies,

I am new in bioinformatics. I got a task from my seniors. I have all SNPs list of 200 rice manicure set. I have to make a list of all genes present in chloroplast in my rice manicure set. How I can generate that list using SNP data. The manicure set contain Japonica and Indica species both....

snp genome gene • 897 views
ADD COMMENTlink written 3.5 years ago by naveedkhanchemist0

See these posts:

Downloading rice chloroplast genome

How To Annotate Parts Of Chloroplast Dna?

See also these papers:

Direct Chloroplast Sequencing: Comparison of Sequencing Platforms and Analysis Tools for Whole Chloroplast Barcoding

Whole-Genome Resequencing and Transcriptomic Analysis to Identify Genes Involved in Leaf-Color

Diversity in Ornamental Rice Plants

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of

genome-wide discovery of single-nucleotide polymorphisms.

There is a current rice database:

ADD REPLYlink modified 3.5 years ago • written 3.5 years ago by natasha.sernova3.7k
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