Question: In Biopython-PDB, please teach me about all atoms distance
0
gravatar for hwendiv
2.6 years ago by
hwendiv0
hwendiv0 wrote:

Hello, Nice people.

I want to get all atoms distance in a PDB file by biopython

especially,

all atoms in all protein residue - all atoms in all water(HOH)

And, I want to take <2.5A

But, I don't know these methods

Please teach me.

p=PDBParser() s=p.get_structure('ID','file')

next.....?

need all atoms in all residue

need all atoms in all HOH

assembly • 1.5k views
ADD COMMENTlink modified 2.6 years ago by Biostar ♦♦ 20 • written 2.6 years ago by hwendiv0

Did you read this first?

http://biopython.org/wiki/The_Biopython_Structural_Bioinformatics_FAQ

ADD REPLYlink written 2.6 years ago by Medhat8.2k
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