Question: Package to classify LncRNA into LncRNAs, intronic LncRNAs and antisense LncRNAs
0
gravatar for sxzhuxu
4.0 years ago by
sxzhuxu40
sxzhuxu40 wrote:

Hi,

LncRNA can be classified into intergenic LncRNAs, intronic LncRNAs and antisense LncRNAs.

I have some lncRNAs' position information in gft format. I konw I can perform this subgroup analysis by comparing with reference genome gtf file. But is there any tools or package or convenient way to perform this classification?

Any suggestion?

Thank you.

ADD COMMENTlink modified 13 months ago by pengchy430 • written 4.0 years ago by sxzhuxu40
1
gravatar for pengchy
13 months ago by
pengchy430
China/Beijing
pengchy430 wrote:

Please have a look at gffcompare, through which genomic gff file could be used as reference ("-r").

ADD COMMENTlink modified 13 months ago • written 13 months ago by pengchy430
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