Using the same dataset, GSE49997, the comparative marker selection result from GenePattern is different from the result of pubmed GEO2R. Anyone have this experience?
Besides, when I use filter to select those with fold change >= 1, the RANK is not at the top. In this case, which one should I selected? those with high fold change or those at the top Rank? Besides, those selected upregulated markers are group in one class, none of them are from the other class, is this normal?