I am performing differential expression of pathogen fungi Aspergillus fumigatus miRNAs in response to human blood infection.
first I trimmed adapters, then mapped trimmed fastq against whole genome fasta of Aspergillus fumigatus by bowtie2 now I am going to extract read count by htseq-count then i need miRBase microRNAs gff for Aspergillus fumigatus but after too much googling I did not find. do you know what can I do please? where I can find miRBase microRNAs gff or Aspergillus fumigatus or can I Aspergillus fumigatus gf3 from enseble neglecting I am working with miRNA????