the question about new TCGA Rnaseq data
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6.3 years ago
pxf109 ▴ 20

I find people often use rsem normalized result of TCGA Rnaseq data in DCC server, but i can't find this data in the TCGA new server any more. Now, they only provide HTSeq-FPKM, HTSeq-FPKM-UQ and HTSeq-Counts data. Is that mean one of these three kind can instead rsem data? If not, how can i get rsem value from this three kind data? Thank you

TCGA RNA-Seq • 2.0k views
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5.8 years ago
JackieMe ▴ 30

FireHose is a good place to get rsem normalized result of TCGA data.

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5.8 years ago
vakul.mohanty ▴ 260

the legacy archive at GDC (https://gdc-portal.nci.nih.gov/) might also have the data your are looking for

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