which genome fasta and GTF files I should use

Question

[zizigolu]

hi,

I have link for downloading some fq files for candida albicans , but actually in ENsembl I fund many candida albicans strains then on which pairs of genome fasta-GTF I should perform DE analysis while there are many c.albicans there???

http://fungi.ensembl.org/info/website/ftp/index.html

thank you

Answer 1

[GenoMax]

You should use the closest strain (if an exact match is not available). If not use the standard reference strain.