Further analysis after motif finding?

Question

[tamadomi]

I have been trying yo analyse the results from the motif analysis I performed with Homer, comparing the motifs in my 2 treatments and finding information about the top motifs.

I was wondering what further analysis can be performed after this?

[natasha.sernova]

See this article:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4763482/

[Asaf]

Compare it to known motifs in TOMTOM