GISTIC 2.0 run of COSMIC CNA data?
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5.1 years ago
pel ▴ 10

Is it possible to somehow feed the CNA data from COSMIC format into e.g. GISTIC 2.0 to obtain, for each gene, one of the 5 possible copy-number levels: -2 deep loss, -1 shallow loss, 0 diploid, 1 low-level gain, and 2 high-level amplification? I have also heard of an algorithm called RAE, but don't if that is easier to use (more appropriate).

COSMIC CNA • 1.9k views
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