Cuffflinks installation problem

Question

[sukesh1411]

Dear Sir,

I am trying to install cufflinks-2.2.1,

i have downloaded and installed boost version 1_55_0 , samtools 0.1.19

cufflinks configured properly

I am facing problem with make

Make error :

Makefile:1418: recipe for target 'abundances.o' failed make[2]: * [abundances.o] Error 1 make[2]: Leaving directory '/home/rnaseq/cufflinks-2.2.1/src' Makefile:258: recipe for target 'all-recursive' failed make[1]: [all-recursive] Error 1 make[1]: Leaving directory '/home/rnaseq/cufflinks-2.2.1' Makefile:196: recipe for target 'all' failed make: ** [all] Error 2

Please, help me in installing cufflinks

Answer 1

[Jeffin Rockey]

If you are not particular about building, the below should help

wget -c http://cole-trapnell-lab.github.io/cufflinks/assets/downloads/cufflinks-2.2.1.Linux_x86_64.tar.gz

tar -xvzf cufflinks-2.2.1.Linux_x86_64.tar.gz

export PATH="/home/rnaseq/cufflinks-2.2.1.Linux_x86_64":$PATH