Question: Generate gene correlation network from mirna data
0
gravatar for carlos_marchi
3.1 years ago by
Brazil, Sorocaba, UFABC
carlos_marchi40 wrote:

Hello guys,

I would like to generate a gene correlation network where the data is mirna expression.

To help in this process , I have the mirna-genes targets data. However, I checked these data and I was able to observe that there are some mirna for a gene, thus how can a gene bind to a specific miRNA or vice-versa?

About the network correlation , I'm using spearman correlation where the correlations above 0.8 are 1 and below 0.8 is 0 in the correlation matrix.

Does anyone have an idea to proceed this?

Thank you very much.

ADD COMMENTlink modified 3.1 years ago by WouterDeCoster41k • written 3.1 years ago by carlos_marchi40

For network correlation have a look on WGCNA.

ADD REPLYlink modified 3.0 years ago • written 3.0 years ago by Lluís R.860
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1630 users visited in the last hour