Question: Generate gene correlation network from mirna data
gravatar for carlos_marchi
4.0 years ago by
Brazil, Sorocaba, UFABC
carlos_marchi60 wrote:

Hello guys,

I would like to generate a gene correlation network where the data is mirna expression.

To help in this process , I have the mirna-genes targets data. However, I checked these data and I was able to observe that there are some mirna for a gene, thus how can a gene bind to a specific miRNA or vice-versa?

About the network correlation , I'm using spearman correlation where the correlations above 0.8 are 1 and below 0.8 is 0 in the correlation matrix.

Does anyone have an idea to proceed this?

Thank you very much.

ADD COMMENTlink modified 4.0 years ago by WouterDeCoster44k • written 4.0 years ago by carlos_marchi60

For network correlation have a look on WGCNA.

ADD REPLYlink modified 3.9 years ago • written 3.9 years ago by Lluís R.910
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