Question: Obtaining beads number from MethylSet (minfi)
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gravatar for ciemanek
16 months ago by
ciemanek20
The Netherlands/Amsterdam
ciemanek20 wrote:

Is there any way to get the information about beads number contributing in signal for probe from MethylSet (minfi package)? I know it is possible for data in shape of RGChannelSetExtended by slot: rgSet@assayData$NBeads, but I want to remove probes with less than 3 beads contributing and I perform few steps before that which requires to operate on MethylSet.

I would appreciate any suggestion.

Kind regards, Agata

R illumina methylation minfi 450k • 476 views
ADD COMMENTlink written 16 months ago by ciemanek20
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