Question: what version of smrtanalysis should be used for older PacBio file format (bas.h5)?
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gravatar for mjp
3.1 years ago by
mjp10
USA
mjp10 wrote:

I have PacBio data in various formats and would appreciate some advice what version of smrtanalysis to use to run HGAP on data stored in bas.h5 and what version to use for bax.h5.

The most recent v2.3.0 doesn't accept the bas.h5. It only accepts the bax.h5. That solves the bax.h5 file problem. It seems I will either have to convert the bas.h5 or use another version of smrtanalysis.

Any advice?

sequencing pacbio hgap assembly • 833 views
ADD COMMENTlink written 3.1 years ago by mjp10

Is the previous version accept both formats?

ADD REPLYlink written 3.1 years ago by Medhat8.5k
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