allele frequency data

0

Entering edit mode

7.6 years ago

soraiiafng • 0

Hi! I'm doing my master thesis and i have allele frequecies of 21 STR loci for 15 different populations. But I don't know how to do the input file for arlequin to compute parwise FST.

I think that my be like this:

[Profile]
NbSamples=14
DataType=FREQUENCY
GenotypicData=0
GameticPhase=0
LocusSeparator=TAB
RecessiveData=0
MissingData='?'
Frequency= REL

[Data]

[[Samples]]
SampleName="Name_of_population_1"
SampleSize=153
SampleData= {

here I will put in the 1st column the name of alleles (example: allele2.2, allele3, allele3.2, etc); in 2nd column the frequency for each allele for loci1; in 3rd column the frequency for each allele for loci 2; etc.... }

SampleName="Name_of_population_2"
SampleSize=100
SampleData= {

here I will put in the 1st column the name of alleles (example: allele2.2, allele3, allele3.2, etc); in 2nd column the frequency for each allele for loci1; in 3rd column the frequency for each allele for loci 2; etc.... }