Question: allele frequency data
0
gravatar for soraiiafng
2.7 years ago by
soraiiafng0
soraiiafng0 wrote:

Hi! I'm doing my master thesis and i have allele frequecies of 21 STR loci for 15 different populations. But I don't know how to do the input file for arlequin to compute parwise FST.

I think that my be like this:

[Profile]
NbSamples=14
DataType=FREQUENCY
GenotypicData=0
GameticPhase=0
LocusSeparator=TAB
RecessiveData=0
MissingData='?'
Frequency= REL

[Data]

[[Samples]]
SampleName="Name_of_population_1"
SampleSize=153
SampleData= {

here I will put in the 1st column the name of alleles (example: allele2.2, allele3, allele3.2, etc); in 2nd column the frequency for each allele for loci1; in 3rd column the frequency for each allele for loci 2; etc.... }

SampleName="Name_of_population_2"
SampleSize=100
SampleData= {

here I will put in the 1st column the name of alleles (example: allele2.2, allele3, allele3.2, etc); in 2nd column the frequency for each allele for loci1; in 3rd column the frequency for each allele for loci 2; etc.... }

etc

But i'm not sure. Some one can help me PLEASE!

arlequin frequency inputfile • 874 views
ADD COMMENTlink written 2.7 years ago by soraiiafng0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 863 users visited in the last hour