Hi! I'm doing my master thesis and i have allele frequecies of 21 STR loci for 15 different populations. But I don't know how to do the input file for arlequin to compute parwise FST.
I think that my be like this:
[Profile]
NbSamples=14
DataType=FREQUENCY
GenotypicData=0
GameticPhase=0
LocusSeparator=TAB
RecessiveData=0
MissingData='?'
Frequency= REL
[Data]
[[Samples]]
SampleName="Name_of_population_1"
SampleSize=153
SampleData= {
here I will put in the 1st column the name of alleles (example: allele2.2, allele3, allele3.2, etc); in 2nd column the frequency for each allele for loci1; in 3rd column the frequency for each allele for loci 2; etc.... }
SampleName="Name_of_population_2"
SampleSize=100
SampleData= {
here I will put in the 1st column the name of alleles (example: allele2.2, allele3, allele3.2, etc); in 2nd column the frequency for each allele for loci1; in 3rd column the frequency for each allele for loci 2; etc.... }
etc
But i'm not sure. Some one can help me PLEASE!