drug response variant datasets
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6.2 years ago
arronslacey ▴ 310

Hi - I am looking for sources of drug response data at SNP level for data mining purposes in my Phd. I m aware of Biobase's PGMD which looks promising, however I don't have the 12k euros for the download subscription for raw access!

I'd be very grateful of anyone knows of any alternative databases. I am not limiting to a certain disease / drug.

Thanks!

snp drug response variant biobase • 1.7k views
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Could you clarify what you mean by drug response at the SNP level? CTR (https://ocg.cancer.gov/news-publications/publications) has data for response of cancer cell lines to numerous drugs, it might have the data your looking for.

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6.1 years ago
dyollluap ▴ 310

https://civic.genome.wustl.edu is a good resource with active development and an easy to use API.

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