Hi I have a mapped sequencing data in sam format (RNA). I want to calculate number of reads are on one region (let's say exon 10), then number of gene are on another region (lets say exon 11), then compare these two read number for each gene.
So basically I have a table who contains two region for each gene, and I want to calculate reads on each region to compare.
Is there any tool I can do such calculation?
Thanks a lot!