Question: Cnv-seq.pl reference hit
1
gravatar for sukesh1411
2.7 years ago by
sukesh141130
South Africa
sukesh141130 wrote:

Hi

I have a doubt while running the cnv-seq.pl script. Currently am working on rice genome to identify the copy number variants. Two files are required to run the above script . I got test.hits file by aligning the reference genome with test genome using samtools which is mentioned in the tutorial. In the cnv-seq tutorial they said ref.hits. But they did not mention how to generate this file.

I am very much confused because i already aligned my test genome with reference genome and got map locations.

Thanks

cnv • 750 views
ADD COMMENTlink modified 2.7 years ago • written 2.7 years ago by sukesh141130
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