Question: reference hit
gravatar for sukesh1411
3.7 years ago by
South Africa
sukesh141130 wrote:


I have a doubt while running the script. Currently am working on rice genome to identify the copy number variants. Two files are required to run the above script . I got test.hits file by aligning the reference genome with test genome using samtools which is mentioned in the tutorial. In the cnv-seq tutorial they said ref.hits. But they did not mention how to generate this file.

I am very much confused because i already aligned my test genome with reference genome and got map locations.


cnv • 944 views
ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by sukesh141130
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