Question: Comparing branch lengths of phylogenies
0
gravatar for natasha
2.6 years ago by
natasha100
natasha100 wrote:

I have generated 2 phylogenies for same sequence data, however for one of these phylogenies I have removed recombination. The topology of the trees are therefore the same but the branch lengths are now different. Is there a way to quantify this - as in, is there an algorithm I can use to show a statistical difference between the two trees?

ADD COMMENTlink modified 2.6 years ago by dago2.5k • written 2.6 years ago by natasha100
0
gravatar for dago
2.6 years ago by
dago2.5k
Germany
dago2.5k wrote:

I think that the APE package in R can compare trees. https://cran.r-project.org/web/packages/ape/ape.pdf

ADD COMMENTlink written 2.6 years ago by dago2.5k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1188 users visited in the last hour