Protein Domain Ontology
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5.2 years ago
hanchen1996 ▴ 10

I am looking for ways to get started on the following:

Input: protein sequence or open reading frame nucleotide sequence 1. find all domains in the protein sequence 2. for each domain, map it to domain ontology 3. compute the distance between 2 ontology terms

can anyone provide hint?

ontology protein domain pfam tigrfam uniprot • 1.3k views
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Maybe I am missing something, but what ontology do you want to use in first place?

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Gene Ontology, I actually found something that maps domain to ontology http://supfam.org/SUPERFAMILY/dcGO/background.html This maps domain to its corresponding biological process or other ontology. But I have yet to figure out the other steps

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