Where can I find CCLE RNAseq BAM files?
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6.2 years ago
vakul.mohanty ▴ 260

Hello,

I'm trying to find where the raw sequencing data from CCLE was relocated after cghub was decommissioned, any pointers will be really helpful.

Thanking You, Vakul

CCLE RNAseq • 5.4k views
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Have you checked GDC legacy archive?

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Ya I looked into the GDC data portal including the legacy archive, which seems to have only TCGA and TARGET (unless I completely missed something).

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Email GDC support with this question. Sometimes new links for old data like this are impossible to find directly.

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Got a reply from them. They should be adding the CCLE dataset to their archive this month.

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I don't see this added yet. Any link or update yet?

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3.2 years ago
mghandi ▴ 20

Raw sequencing data are available at Sequence Read Archive (SRA) under accession number PRJNA523380

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Is that mentioned on their website somewhere?

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