Question: which tool to compare two proteomes ?
0
gravatar for guillaume.rbt
3.0 years ago by
guillaume.rbt620
France
guillaume.rbt620 wrote:

Hi everyone,

I have two proteomes of two strains of the same fungi species. I would like to compare the two fasta files, and find which peptides sequences are similar between the two sets, and which one are specific. I don't know which is the best tool to do that.

Does anyone have any idea? Thanks

peptides software proteome fasta • 1.6k views
ADD COMMENTlink written 3.0 years ago by guillaume.rbt620
1

In my experience divergence between strains is high for fungi. Standalone version of inparanoid http://inparanoid.sbc.su.se/cgi-bin/index.cgi should work ok.

ADD REPLYlink written 3.0 years ago by microfuge1.4k
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