Question: which tool to compare two proteomes ?
gravatar for guillaume.rbt
3.0 years ago by
guillaume.rbt620 wrote:

Hi everyone,

I have two proteomes of two strains of the same fungi species. I would like to compare the two fasta files, and find which peptides sequences are similar between the two sets, and which one are specific. I don't know which is the best tool to do that.

Does anyone have any idea? Thanks

peptides software proteome fasta • 1.6k views
ADD COMMENTlink written 3.0 years ago by guillaume.rbt620

In my experience divergence between strains is high for fungi. Standalone version of inparanoid should work ok.

ADD REPLYlink written 3.0 years ago by microfuge1.4k
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