gene name in vcf file

Question

[call]

Hello!

I have VCF files and should like to add gene name. I tried by bcftool annotation.. but not got success

I have a gtf file and bed file in this formate:

(1 161452 161506 "ENSSSCG00000030218 . - ensembl exon ....... )

Can someone help me? thanksss

Answer 1

[Sean Davis]

I would suggest using a tool such as snpEff, annovar, Ensembl VEP, or the Bioconductor VariantAnnotation package for this task.