Question: genome-guided transcriptome mapping, genome or gene set?
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gravatar for 402374688
3.0 years ago by
40237468820
40237468820 wrote:

I have the genome of one species and the gene set as well. When aligning reads back to genome(gene set), which is better to use, genome or annotated gene set from genome? And what are their advantages and drawbacks? Thank you.

ADD COMMENTlink modified 3.0 years ago by EVR560 • written 3.0 years ago by 40237468820
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gravatar for EVR
3.0 years ago by
EVR560
Earth
EVR560 wrote:

You can make use of GMAP or PASA or BLAT for aligning your gene set back to Genome.

ADD COMMENTlink written 3.0 years ago by EVR560

Sorry but what is it used for?

ADD REPLYlink written 3.0 years ago by 40237468820
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