I see a bunch of new books on statistical genetics in Amazon now -

Statistical Genetics: Gene Mapping Through Linkage and Association

Handbook of Statistical Genetics (2 volume set)

Mathematical and Statistical Methods for Genetic Analysis

Statistical Genetics of Quantitative Traits: Linkage, Maps and QTL

Am I missing a classic book on Linkage and GWAS analysis?

I strongly recommend Douglas Falconers book. I loved it as an undergrad. I reviewed "Bioinformatics for Geneticists": Kerr AR, Genetical Res (2007), 89: 123-124. It can be read here http://tinyurl.com/39heg68