tool for computing uSPR distance between trees
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5.2 years ago

Hello guys.

I generated lots of trees(unrooted) by different genes.

And I want to compute the uSPR distance between any two of them.

Is there any useful tool?

I've found some, but they're for rooted trees ( rSPR distance).

It would be better if the tool is a command line version so I can call it from my program.

thanks!!

SPR unrooted tree topology • 1.2k views
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This link looks useful.

https://github.com/cwhidden/uspr

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Thx. I have tried the link. It needs the user to re-compile. But when I ran 'make', the compilation was terminated showing the message "boost/graph/adjacency_list.hpp: No such file or directory" The code seems not complete...

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