Question: tool for computing uSPR distance between trees
0
gravatar for admalleablebronze
2.6 years ago by
admalleablebronze0 wrote:

Hello guys.

I generated lots of trees(unrooted) by different genes.

And I want to compute the uSPR distance between any two of them.

Is there any useful tool?

I've found some, but they're for rooted trees ( rSPR distance).

It would be better if the tool is a command line version so I can call it from my program.

thanks!!

topology unrooted tree spr • 690 views
ADD COMMENTlink written 2.6 years ago by admalleablebronze0

This link looks useful.

https://github.com/cwhidden/uspr

ADD REPLYlink written 2.6 years ago by natasha.sernova3.4k

Thx. I have tried the link. It needs the user to re-compile. But when I ran 'make', the compilation was terminated showing the message "boost/graph/adjacency_list.hpp: No such file or directory" The code seems not complete...

ADD REPLYlink written 2.6 years ago by admalleablebronze0
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