Question: Pathway analysis of Mouse
0
gravatar for arpa530
3.5 years ago by
arpa53010
India
arpa53010 wrote:

Hello,

I am working on RNA-seq analysis of mouse. I have found significantly differentiated gene through cuff diff analysis. After doing that I have performed the Gene Ontology and Pathview analysis. Here is my next question how can I identify which genes are linked to multiple pathways? Because Pathview gives the individual pathway result. It is very esoteric to do this work manually by looking all those genes. Your suggestion will be highly appreciated.

Thanks.

rna-seq • 2.0k views
ADD COMMENTlink modified 3.5 years ago by EagleEye6.6k • written 3.5 years ago by arpa53010
2
gravatar for Guangchuang Yu
3.5 years ago by
Guangchuang Yu2.3k
China/Guangzhou/Southern Medical University
Guangchuang Yu2.3k wrote:

see this RNA workflow which use clusterProfiler.

ADD COMMENTlink modified 3.5 years ago • written 3.5 years ago by Guangchuang Yu2.3k
0
gravatar for EagleEye
3.5 years ago by
EagleEye6.6k
Sweden
EagleEye6.6k wrote:

Gene Set Clustering based on Functional annotation (GeneSCF)

ADD COMMENTlink written 3.5 years ago by EagleEye6.6k
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