Question: Getting all the transcript sequences translated out of a transcriptome
0
gravatar for davidstupski
2.7 years ago by
davidstupski10
davidstupski10 wrote:

Hey Everyone,

I'm trying to figure out how to take a transcriptome of a given animal, translate it, and then get a series of amino acid sequence files to get features like amino acid content differences across different species. The problem is when I try to scrape for all the files from a species I often end up with duplicates of the same transcripts, does anyone know a way to do this?

David

sequence • 1.1k views
ADD COMMENTlink modified 2.6 years ago by Biostar ♦♦ 20 • written 2.7 years ago by davidstupski10
2

Have you tried TransDecoder?

ADD REPLYlink written 2.7 years ago by genomax67k
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