Getting all the transcript sequences translated out of a transcriptome

Question

[davidstupski]

Hey Everyone,

I'm trying to figure out how to take a transcriptome of a given animal, translate it, and then get a series of amino acid sequence files to get features like amino acid content differences across different species. The problem is when I try to scrape for all the files from a species I often end up with duplicates of the same transcripts, does anyone know a way to do this?

David

[GenoMax]

Have you tried TransDecoder?