Dear all, I am trying to find out if any of my lncRNA sets (278) can interact with my candidate gene sets (28).
I have obtained lncRNA sequence from a microarray dataset (GSE58043).
I used lncTar website to test their interactions. No interaction was detected.
When I checked the sequence of lncRNAs, I realized that their lengths are shorter than 200nt (60nt).
I checked other lncRNA datasets deposited in GEO and I found out that all lncRNA sequences are 60nt.
I could not find any lncRNA databases that I can obtain the full length of lncRNAs.
My question is if I can rely on lncTar results considering the short length of lncRNAs?
I appreciate any help
Thank you in advance