Off topic:Gene count table from STRINGTIE/BALLGOWN for WGCNA
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5.6 years ago

I am using Bowtie+Stringtie+Ballgown for differential expression analysis of certain microbial RNA-seq data. I also want to create a whole genome regulatory networks using WGCNA package. Is it possible to obtain NORMALIZED COUNT table from Stringtie/Ballgown to use in WGCNA? (I have previously used Cuffnorm outputs for WGCNA). My data has 10 samples each as control and non-control.

RNA-Seq Stringtie Ballgown WGCNA • 6.9k views
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