Question

python: translate DNA sequences to protien sequences

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7.5 years ago

Am.A ▴ 20

Hi

Is there a python script that translate a multi-fasta file that contains DNA sequences to amino acid sequences and save the results in a file.

sequencing • 9.2k views

ADD COMMENT • link updated 7.3 years ago by Biostar 20 • written 7.5 years ago by Am.A ▴ 20

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Did you try to write something?

ADD REPLY • link 7.5 years ago by Rob ▴ 150

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They are plenty of examples online:

They could be used with a little bit of work on the format of the input.

ADD REPLY • link 7.5 years ago by VHahaut ★ 1.2k

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Whatever script you choose, be sure you use the correct codon table

ADD REPLY • link 7.5 years ago by lakhujanivijay 5.8k

score 1 · Answer 1 · 2016-09-30

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7.5 years ago

luzswrld ▴ 10

Maybe in the Biopython tutorial you can find an answer in Chapter 3.9 Translation: http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc25

ADD COMMENT • link 7.5 years ago by luzswrld ▴ 10