Question: python: translate DNA sequences to protien sequences
0
gravatar for Am.A
3.1 years ago by
Am.A20
SA
Am.A20 wrote:

Hi

Is there a python script that translate a multi-fasta file that contains DNA sequences to amino acid sequences and save the results in a file.

sequencing • 3.3k views
ADD COMMENTlink modified 2.9 years ago by Biostar ♦♦ 20 • written 3.1 years ago by Am.A20
1

Did you try to write something?

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by Rob100

They are plenty of examples online:

Python Script To Translate Rna Sequences To Protein Sequences

They could be used with a little bit of work on the format of the input.

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by VHahaut1.1k

Whatever script you choose, be sure you use the correct codon table

https://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

ADD REPLYlink written 3.1 years ago by lakhujanivijay4.5k
1
gravatar for luzswrld
3.1 years ago by
luzswrld10
luzswrld10 wrote:

Maybe in the Biopython tutorial you can find an answer in Chapter 3.9 Translation: http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc25

ADD COMMENTlink written 3.1 years ago by luzswrld10
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