I'm using 1000 genomes pilot data, I've downloaded 3 zipped files. And I then use all three in the same command so it looks like this:
bwa index input_1.fastq input_2.fastq input_3.fastq
This produces 5 files, 2 are binary and 3 are fastq again.
But the usage for BWA-mem asks that the index be specified as 1 file, what's going on here? thanks!
Hi, I was working to make an index file for bacterial genomes by using BWA command
bwa index -a bwtsw bacterial_genomes.fna
This command was working from last 4 days and was functional due to big database, suddenly due to power outage this command was interrupted. I want to continue this command from last point where it was working before power outage. Please help me regarding this issue.
No you can't do that. You have to start over. There is no way around this.