Entering edit mode
7.5 years ago
lwy304
•
0
Hi there,
I'm having a problem with running vcf-creator. Any idea what's happening? Here's the output
./run_VCF_creator.sh -I -f disco_13g-types_k_31_c_auto_D_6_P_4_b_0_coherentBWA_MEM.sam -o disco_13g-types.vcf ...
...Skipping alignment phase...
File "/global/software/DiscoSNP++-2.2.9/scripts/VCF_creator.py", line 59
except getopt.GetoptError as e: ^
SyntaxError: invalid syntax there was a problem with the VCF creation (command was "python /global/software/DiscoSNP++-2.2.9/scripts/VCF_creator.py -s disco_13g-types_k_31_c_auto_D_6_P_4_b_0_coherentBWA_MEM.sam -o disco_13g-types.vcf "
Thanks for your help,
Lester
