Question: How to draw lego plot Using Mutation Data (MAF format input)?
0
gravatar for pradyumna Jayaram
3.7 years ago by
Manipal, School Of Life Sciences
pradyumna Jayaram200 wrote:

Hi all,

I found an article on nature (http://www.nature.com/ng/journal/v45/n5/full/ng.2591.html) where Lego plots were shown which represents mutation frequencies of the samples. How do I replicate the similar kind of graph with the data I have?

I found that MutSigCV can be used to plot the similar graph. But the input data I have is simple maf(mutation annotation format) file. Can lego plot be drawn with the data? Is it possible with any R scripts? please share if some one have any idea.

Thanks in Advance.

Pradyumna

ADD COMMENTlink modified 3.7 years ago by poisonAlien2.8k • written 3.7 years ago by pradyumna Jayaram200
1

I would advice against it. Becuase of the three dimensions, some bars can block others.

ADD REPLYlink written 3.7 years ago by Irsan7.1k
2
gravatar for poisonAlien
3.7 years ago by
poisonAlien2.8k
Asgard
poisonAlien2.8k wrote:

Here

ADD COMMENTlink written 3.7 years ago by poisonAlien2.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1407 users visited in the last hour