Question: Crab eating macaque (M. fascicularis) transcriptome GTF file
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gravatar for karthik
3.5 years ago by
karthik60
United States
karthik60 wrote:

Hi, I am looking for a GTF file (transcriptome) annotation for the crab eating macaque (M. fascicularis) with gene symbols. The one I downloaded from the UCSC table browser is less than 4 MB, and I'm not sure if it's complete or up to date. The one on ensembl appears to be large (ftp://ftp.ensembl.org/pub/pre/gtf/macaca_fascicularis/) but does not contain gene names (i.e. gene symbols, not Ensembl IDs) . I was wondering if any non model organism aficionados might have advice on how to obtain a reliable GTF file.

Thanks!

ADD COMMENTlink modified 3.5 years ago by igor9.8k • written 3.5 years ago by karthik60
0
gravatar for igor
3.5 years ago by
igor9.8k
United States
igor9.8k wrote:

How about the one from NCBI?

https://www.ncbi.nlm.nih.gov/genome/776

ADD COMMENTlink written 3.5 years ago by igor9.8k
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