Question: on line COG analysis
0
gravatar for buthercup_ch
3.1 years ago by
buthercup_ch30
Japan
buthercup_ch30 wrote:

Hello everyone,

We obtained the complete genome of a bacterial strain and now I am analyzing the sequence. I am trying to perform any functional analysis and by now done with the one based in KEGG categories, what is quite broad. I am working also in GO enrichment, but wanted to compare to a COG analysis.

I am not computational, so I am interested in a way to do a COG analysis simply and on line, by so far I couldn't find anything besides de software COGcognitor that I have download from https://www.ncbi.nlm.nih.gov/COG/, but that I don't know how to use. Does any have any recommendation?

Thanks in advance

cog bacteria genome • 2.7k views
ADD COMMENTlink modified 3.1 years ago by Farbod3.3k • written 3.1 years ago by buthercup_ch30

how do i make a pie chart for my COG?

ADD REPLYlink written 3.1 years ago by sidrairshad290

Dear sidrairshad29 , Hi

I think if you have the "categories" and the "numbers" belong to each functional category, you can use any software (e.g R, Microsoft Excel. Adobe Illustrator, . . . ) for drawing your pie-chart.

Or maybe I did not get the point correctly ?

Take care

ADD REPLYlink modified 3.1 years ago • written 3.1 years ago by Farbod3.3k

thank you so much. i have done what i needed. first i send my proteome to WebGMt and then make pie chart using excel

ADD REPLYlink written 3.1 years ago by sidrairshad290

~ Bonne chance !

ADD REPLYlink written 3.1 years ago by Farbod3.3k
2
gravatar for Prasad
3.1 years ago by
Prasad1.6k
India
Prasad1.6k wrote:

you can use WebMGA or BASys. a standalone tool BPGA

ADD COMMENTlink modified 3.1 years ago • written 3.1 years ago by Prasad1.6k
1
gravatar for Farbod
3.1 years ago by
Farbod3.3k
Toronto
Farbod3.3k wrote:

Dear buthercup_ch, Hi.

Have you tried this :

http://weizhong-lab.ucsd.edu/metagenomic-analysis/server/cog/

ADD COMMENTlink written 3.1 years ago by Farbod3.3k
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