Question: Brain expression of different transcripts of the same gene. Is there a database?
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gravatar for knsvar
3.7 years ago by
knsvar10
knsvar10 wrote:

Hello everyone!

I am working on a gene with 5 different transcripts.

2 or 3 are quite similar as they differ perhaps in 1-2 amino acids. Apart from this, they differ significantly in the 5' UTR.

Maybe a silly question but any idea if, how and where I could find which transcript(s) is/are expressed in the brain?

Thank you in advance,

Konstantinos

ADD COMMENTlink modified 3.6 years ago • written 3.7 years ago by knsvar10
1

Check out the Allen Brain Atlas. They have some microarray datasets that might have transcript-level metrics. You might also get lucky and find that some of the in situ probes are transcript-specific, though I wouldn't hold my breath there.

ADD REPLYlink written 3.7 years ago by Devon Ryan95k
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gravatar for WouterDeCoster
3.7 years ago by
Belgium
WouterDeCoster43k wrote:

This is a quite valuable resource, but it's mouse data: http://web.stanford.edu/group/barres_lab/brain_rnaseq.html

ADD COMMENTlink written 3.7 years ago by WouterDeCoster43k
0
gravatar for knsvar
3.6 years ago by
knsvar10
knsvar10 wrote:

Thanks a lot. Very useful but I could not finally find the information I was looking for (has to do with my transcripts!).

ADD COMMENTlink written 3.6 years ago by knsvar10

Please use ADD COMMENT or ADD REPLY to answer to earlier posts, as such this thread remains logically structured and easy to follow.

ADD REPLYlink written 3.6 years ago by WouterDeCoster43k
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