Question: metabolite mapping - from PDB ligand to KEGG
0
gravatar for bioraghu.iisc
2.4 years ago by
bioraghu.iisc0 wrote:

Dear all

I am having some problem in mapping many of my PDB Ligands (Hetero ID for pdb ligands) to KEGG IDs or Chebi. As i have a large number of ligands, i want in an automated way of the mapped ligands in either KEGG or HMDB/ChEBI.

I found mapping between cheEBI and KEGG, not for PDB Hetero code to KEGG ID. Is there any direct mapping list available?

Pls. suggest

alignment • 713 views
ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by bioraghu.iisc0
0
gravatar for Prasad
2.4 years ago by
Prasad1.5k
India
Prasad1.5k wrote:

have you tried biodbnet db2db??

ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by Prasad1.5k
0
gravatar for bioraghu.iisc
2.4 years ago by
bioraghu.iisc0 wrote:

PDB Id Ligand Names SIA sialic acid ATP adenosine triphosphate GLU alpha glucose BTN Biotin HEM Heme

Let's say I have these ligands..i want the corresponding KEGG ID, if found.

ADD COMMENTlink written 2.4 years ago by bioraghu.iisc0
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