I have beadarray readIllumina microarray data, and analysing using Limma, I have three file: control_probe_profile.txt, sample_probe_profile.txt and sample info file. There is a readTargets function in limma package.
library(limma) targets <- readTargets(Targets.txt)
Is sample name in Targets.txt file should be same order as they appear in sample_probe_profile.txt??
Thanks in advance