Commercial software platform for stotage of omics data and basic analysis by scientists

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7.5 years ago

Brett ▴ 150

I am looking for a software solution for team of 20 scientists of various disciplines. In short we are generating omics data (Genome sequences, Metabolomics, RNA sequencing) and I want the scientists to have access to this data to do basic analysis themselves (BLAST, Genome comparisons, compare expression levels of a gene under different conditions).

Ideally I would have a backend for actually processing the raw data (pipeline) but this is not essential.

I imagine that there must be solutions out there for Biotech and Pharma but I have no feel what is typically used by big companies, what is the best and easiest to use front end.

Any input or experiences would be much appreciated.

Omics data storage data visualisation • 1.4k views

ADD COMMENT • link updated 3.5 years ago by Biostar 20 • written 7.5 years ago by Brett ▴ 150

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Just setup a Galaxy server and save the money. Alternatively, you can pay an arm and a leg for CLC and have most of the same functionality.

ADD REPLY • link 7.5 years ago by Devon Ryan 104k

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I've found a long list asking your question. I hope it may be useful to some extent.

http://grouthbio.com/Genome_Software_Service.php

Some academics, an article:

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions