viewing microRNA in IGV
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7.4 years ago
rob.costa1234 ▴ 310

I have bam alignments of human microRNA geocode 19 What is the best way to view such bam files in IGV. I could not find sepcific microRNA based geneome in IGV repository. Any suggestion

Thanks

microRNA IGV • 2.2k views
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The usual genome should work. I am assuming that the alignment (for the small RNA-seq reads) was done on hg19 genome.

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hg19 will not have microRNA names/ annotations. the way I did was aligned with hg19 and discard coding seq and keep regions which show align only with miR19 db

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