Mapping to protein networks
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8.2 years ago
khorms ▴ 230

I have a set of human proteins and I want to map them at protein network in order to know, whether they interact which each other. Which servers are the most useful for this purpose? Thank you!

protein network mapping • 1.8k views
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String is an important resource for that http://string-db.org/

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8.2 years ago
ssv.bio ▴ 200

CPDB, IPA, Visant in addition to string. WGCNA, BIONET, MEGENA, Connectivity map, for detecting functional association if you have expression data.

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It would be best to include links for programs you are mentioning in the post.

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Are there any good publications about comparison of these methods? By the way, it looks like IPA is not a free product, is it?

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