Question

Mapping to protein networks

0

Entering edit mode

7.5 years ago

khorms ▴ 230

I have a set of human proteins and I want to map them at protein network in order to know, whether they interact which each other. Which servers are the most useful for this purpose? Thank you!

protein network mapping • 1.7k views

ADD COMMENT • link updated 7.5 years ago by ssv.bio ▴ 200 • written 7.5 years ago by khorms ▴ 230

1

Entering edit mode

String is an important resource for that http://string-db.org/

ADD REPLY • link 7.5 years ago by microfuge ★ 1.9k

score 3 · Answer 1 · 2016-10-10

3

Entering edit mode

7.5 years ago

ssv.bio ▴ 200

CPDB, IPA, Visant in addition to string. WGCNA, BIONET, MEGENA, Connectivity map, for detecting functional association if you have expression data.

ADD COMMENT • link 7.5 years ago by ssv.bio ▴ 200

0

Entering edit mode

It would be best to include links for programs you are mentioning in the post.

ADD REPLY • link 7.5 years ago by GenoMax 141k

0

Entering edit mode

Are there any good publications about comparison of these methods? By the way, it looks like IPA is not a free product, is it?

ADD REPLY • link 7.5 years ago by khorms ▴ 230