Question: Samtools' mpileup with pysam: enabling and disabling BAQ probabilistic realignment
gravatar for abascalfederico
5 months ago by
abascalfederico850 wrote:


Reading the documentation it is not clear to me if pysam pileup iterator invokes the BAQ probabilistic realignment in Samtools. I need to compare some results with and without BAQ. Is it possible to do this with Pysam? If not, would it be difficult to change the code to do this? Or is there any other mpileup wrapper available?

Thanks! Federico

mpileup pysam samtools • 245 views
ADD COMMENTlink written 5 months ago by abascalfederico850
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1492 users visited in the last hour